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On 12/26/2017 I paid x dollars to New York state as an estimate of what I owed for 2017.
After going through the turbo tax flow, it shows my state tax balance as x.
Is there any way to tell turbotax that this amount has already been paid?
BobE's comment is correct.
There is an option to do this in the federal credits section under "Estimates".
Required, but never shown