4

I can add files to transactions using menu

Transaction > associate file with transaction to assign files. 

I want to export the transactions in a way so that this file reference it included in the exported file.

I'm using GnuCash 2.6.13 on Linux

2

The file association feature is new to gnucash, and will not be fully supported until 2018 (link).

I have had success using the python bindings in gnucash to accomplish tasks which are not supported through the user interface (for example), so if you know or would like to learn some python coding, that might solve your problem.

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