Someone with a J1 Scholar visa becomes a resident alien for tax purposes in the US on Jan 1, 2018 (following the two calendar years' rule). Still, under the saving clause, it may be possible to claim tax treaty benefits for part of 2018. As explained in Publication 519, one should just file 1040, reporting somewhere the exempt part of income under the treaty.
Provided the above is correct, is it still possible to take the now standard 12k $ deduction on the income from the remaining part of 2018?